Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791864.1_cds_XP_016509189.1_2141
CDS Infomation

[gene=LOC107826683] [db_xref=GeneID:107826683] [protein=DNA ligase 1-like] [protein_id=XP_016509189.1] [location=complement(join(878..1021,2325..2384,3384..3497,3633..3764,3874..4635,5628..5690,6818..7306))] [gbkey=CDS]
Sequence

ATGGGAAACCGGCGGTTAGCGGTGGTAGCGATAAGCGACGACGAGGACGACGACGACAAG
TTGCCGCTATCGCGTGTAACACGCGCTTCCAACAACGGCGAAGATAAAGCGAATAGTCAA
AGGAAGCGTAAGAAAGTGAAGCTCGACGAAGAAGAAGAAGAAGAAGAAAAGCCACAGGAG
GAAGAAGAGGAAGCGAATAATGATGATGAAAGTAGAGATAAGAGGAAGAAGAAGAGGAAA
GTGACGGAAAATGAGGAGGAGGAGGAAGAGGAAAGAGGCCGGGGGAAGAGGAATAAGAAG
AAGAAATTTGACGAAGAACCGGAGGTTGAATCGGAACCTGAACCGGTTGAAGAGGAGGAG
GAGGAGGTGGAAGAAGAACAGCTGGAAGATGCTAAGCCTATTGGTGAGGTAATTAGGGTT
ACTGGAAAAGGTAAAGGGAGGAGAAACCATTACGAGTCTTTTGAGTACGATGGAAATCGC
TATGAACTTGAGGATCCCGTGCTCTTGGTTCCAGAAGCTAAAAATCAGAAGCCTTATGTG
GCAATTATCAAGGATATTACTCAGACCAAGGATGGGAACATGATGGTCACAGGACAGTGG
TTTTACAGACCCGAGGAAGCTCAAAGAAGAAATGGTGGAAATTGGCAATCACGAGACACG
AGGGAATTGTTCTATAGTTTTCATAGGGACGAAGTTCCCGCAGAGTCAGTCATGCACAAG
TGTGTGGTGCACTTCATACCGTTAAACAAGCAGATTCCAGGTCGGAAAGAGCATCCTGGT
TTTATTGTTCAAAAGGTATATGACACTGAGCAGATGAAGCTTTTCAAGTTAACAGACAAG
GATTATGAAGATACCAAACAGCAGGAAATTGATCTGCTTGTTCATAAGACTATTGCACGA
GTTGGGCATCTTCCTGACATTGAAACTGAGGATAATTCTGCAGCTCCTGTTAGTCAGGAA
GACCAATTGAAGAGTAAACGACTTTTGAGGAAGAAGAGCATGACGCCTTTGGATGTCACC
AGAGAAGATGAAGCACCAACTAGATTTGGTCAATCTAAAGCAGAAACTCCAGGCAGTTGT
CCCAATAATGCATCAGAATACTTCATCATCCTTTCAAACTTCAATGTCCTAACTGGTGAA
ACACAGCGTGACAAATGGCTGGAAAAACTGCTGCAGTCAATTCAGTTTTTGTGCAATCCT
GTGGATAATGTACAAAATGATGGTAAAGAAAAAGGGGGCTCAGATGTTACTGATTTTACT
GGTAATACCGGTTCTGCAAAGCATGTGAATGAGTCTCTAGACGATGGTGCCAATGGTGAT
AAGTTTCGATGGCCAGACAGTGCTGTCCCTGCCGTAGTCGCTCTGGAGAAAGCTGCACAC
GAGGCTCTCTCATGTGATTTTCAGAAGTACAATCAGAAGATGAGGCAGTTAACATTCAAT
CTTAAGAACAATTCTTCCTTATCAAAAACATTCCAGAACAGCTCACTCTTAGCACGCCGT
CTTCTGAATGGGGAGTTGGATCCCTCACAAATACTGAACATGTCCCCCAATGAGCTAAAG
GAAGGTCTAACAGCAGAAGAGATAGCAAGCAGGGAGCCCGAAGAGCCGGAGCCCATACAG
ATGACTGATGCTCGTTGCAAAAGATGCACAGAGAAAAAAGTGCGGCTCATGGAGATTATT
CAGGCTGGACATGGAGACCGTTACCAGGTTTGTGCTTCCAGCTTTTTTCTGCTTGAGATG
GACTTCTTCGTTGATACATCATGA

Peptide Sequence

PEP ID

XP_016509189.1
PEP Infomation

PREDICTED: DNA ligase 1-like [Nicotiana tabacum]
Sequence

MGNRRLAVVAISDDEDDDDKLPLSRVTRASNNGEDKANSQRKRKKVKLDEEEEEEEKPQE
EEEEANNDDESRDKRKKKRKVTENEEEEEEERGRGKRNKKKKFDEEPEVESEPEPVEEEE
EEVEEEQLEDAKPIGEVIRVTGKGKGRRNHYESFEYDGNRYELEDPVLLVPEAKNQKPYV
AIIKDITQTKDGNMMVTGQWFYRPEEAQRRNGGNWQSRDTRELFYSFHRDEVPAESVMHK
CVVHFIPLNKQIPGRKEHPGFIVQKVYDTEQMKLFKLTDKDYEDTKQQEIDLLVHKTIAR
VGHLPDIETEDNSAAPVSQEDQLKSKRLLRKKSMTPLDVTREDEAPTRFGQSKAETPGSC
PNNASEYFIILSNFNVLTGETQRDKWLEKLLQSIQFLCNPVDNVQNDGKEKGGSDVTDFT
GNTGSAKHVNESLDDGANGDKFRWPDSAVPAVVALEKAAHEALSCDFQKYNQKMRQLTFN
LKNNSSLSKTFQNSSLLARRLLNGELDPSQILNMSPNELKEGLTAEEIASREPEEPEPIQ
MTDARCKRCTEKKVRLMEIIQAGHGDRYQVCASSFFLLEMDFFVDTS

Transcript Sequence

Gene sequence data has not been registered.